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Case Studies

Microbial Biosensor for Environmental Monitoring

A four-bioreactor study identified the pH, dissolved oxygen, iron supplementation, and harvest timing that improve bacterial pigment production.

August 26, 2026

A controlled bioreactor study reveals the key process levers that drive target-pigment production in our proprietary bacterial strain - and why getting them right matters.

    The challenge

    Bacteria do not perform the same way in every environment. Temperature, acidity, available oxygen, and trace minerals can all push a microorganism's behaviour in very different directions - encouraging it to multiply rapidly, to slow down, or to switch on entirely different biological programmes. For biotechnology applications, identifying the precise conditions that unlock a desired behaviour is critical.

    This study focused on a proprietary purple non-sulphur bacterium of significant interest in biotechnology. The molecule we wanted to maximise was the target pigment - a light-harvesting molecule with potential applications in photovoltaics, medical imaging, and photodynamic therapy. The question was simple: which combination of conditions would make the bacteria produce the most of it?

    Rather than evaluating conditions sequentially, we used a structured experimental design with parallel bioreactors, each operated under a distinct set of conditions, to identify the strongest combination efficiently.

    How the experiment was designed

    Rather than guessing or testing one variable at a time, we employed a fractional factorial design - an efficient approach that allowed us to evaluate multiple process variables in parallel.

    The process variables we tuned were acidity (pH), the amount of dissolved oxygen in the culture (DO), and whether we supplemented the growth medium with a small amount of iron in the form of ferric citrate.

    Experimental design. Parallel bioreactors received distinct combinations of pH, oxygen level, and iron supplementation, revealing a clear best-performing condition.Each bench-scale bioreactor was inoculated with the same starting culture density and fed the same glucose solution throughout. Temperature was held constant. All other parameters were automated by the DASbox system, so the only intentional differences between reactors were the process variables under investigation.

    How the bacteria grew

    Across the reactors, growth followed a recognisable pattern. During the early fermentation stage, the bacteria multiplied rapidly. Later, the number of live, colony-forming cells plateaued while bacterial mass continued to accumulate. This divergence between cell count and cell mass is well known: as nutrients are depleted, cells stop dividing but may still accumulate internal molecules.

    Growth and harvest trends. Bacterial mass continued to increase after live cell count had begun to plateau. The selected harvest window balances cell count and viability.The study identified an intermediate point in the fermentation as the preferred harvest window, prioritising cell viability over maximum biomass.

    Which conditions produced the most pigment?

    The target pigment is fluorescent - it glows when illuminated at the right wavelength. We used this property to track its relative abundance continuously throughout fermentation without disturbing the cultures. The results showed a consistent and striking pattern.

    Pigment fluorescence trends. The best-performing condition showed the highest fluorescence throughout the study and peaked within the preferred harvest window. The results represent qualitative trends from a limited-replication study.The best-performing condition - neutral pH, limited dissolved oxygen, and iron supplementation - consistently outperformed the other conditions. Its fluorescence peak aligned with the optimal harvest window.

    Key process levers - at a glance

    Taken together, the results reveal independent levers for improving target-pigment output - each adjustable individually, providing actionable process knowledge for scale-up.

    Key process levers. Neutral pH, lower dissolved oxygen, and ferric citrate supplementation were associated with enhanced target-pigment production. The graphic represents qualitative trends observed across parallel bioreactor conditions.

    What this means

    This study translates a biological question into a precise, actionable process specification. Starting from bench scale, we now have a well-defined directional recipe:

      The next phase will apply these parameters at a larger bioreactor scale using the Solaris fermentation system. This scale-up will test whether the selected conditions translate to larger culture volumes and begin to establish commercially relevant yield data.

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